PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.8G268900.1.p
Common NamePRUPE_ppa013280mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family GATA
Protein Properties Length: 132aa    MW: 14343.6 Da    PI: 10.3953
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.8G268900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA611.5e-192558134
                GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34
                        C+ C+tt+TplWR gp g++tLCnaCG++yrk++
  Prupe.8G268900.1.p 25 CTDCHTTTTPLWRGGPAGPRTLCNACGIKYRKRK 58
                        ********************************87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004017.9E-161970IPR000679Zinc finger, GATA-type
PROSITE profilePS5011413.5211955IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.05E-132259No hitNo description
Gene3DG3DSA:3.30.50.107.6E-162359IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.49E-142459No hitNo description
PROSITE patternPS0034402550IPR000679Zinc finger, GATA-type
PfamPF003203.6E-172558IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048527Biological Processlateral root development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 132 aa     Download sequence    Send to blast
MDQRQKGSEA EHMNQSSIAP PSKSCTDCHT TTTPLWRGGP AGPRTLCNAC GIKYRKRKRA  60
LVGLNKGATG TERRKHKTTG APLKLGLKSM EREMVEMVFH FHKRKLKEEE EAAILLMALS  120
CSSGTGGAVY A*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007201270.18e-94hypothetical protein PRUPE_ppa013280mg
TrEMBLM5VMQ38e-94M5VMQ3_PRUPE; Uncharacterized protein
STRINGPOPTR_0002s20080.17e-34(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15693298
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49300.12e-18GATA transcription factor 16